Services

Spatial Transcriptomics

We use the Visium spatial gene expression technology from 10X Genomics. We work with fresh frozen tissue or FFPE samples. We cut sections, produce H&E images and spatial libraries and sequence to the desired read depth. We map the reads to the target genome and conduct basic QC and cluster analysis using SpaceRanger, Loupe Browser and Seurat. All data are property of the client. All unused materials are returned to client. 

Spatial Transcriptomics
Spatial Transcriptomics

Single Nuclei and Single Cell Transcriptomics

We can obtain single nuclei gene expression data from serial sections of the tissue blocks used for spatial transcriptomics. Spatial and single nuclei gene expression are integrated using Seurat and similar tools.

We also provide standalone single cell gene expression services (without Visium). We work with frozen cells provided by the client, and also established custom cell culture models for client drug response studies and collected functional data, image data, and/or molecular data in addition to the single cell RNAseq data.

Related and Additional Services

Confocal Imaging

Confocal Imaging

  • Biomarker imaging for spatial multiomics
  • Proteomic vaildation of spatially distinct cell states
FACS isolation of Cell Subsets

FACS isolation of Cell Subsets

  • Bulk cell enrichment by magnetic bead isolation
  • Antibody specific cell type isolation by FACS
Single Cell Immune Profiling

Single Cell Immune Profiling

  • Comprehensive Immune Profiling
  • BCR/TCR profiling
  • Antigen specific TCR clonotype profiling with dCode dextramers
In-Depth Bioinformatics

In-Depth Bioinformatics

  • Detailed informatics and data visualization
  • Data integration for multiomics
  • Custom analysis workflows
High Content Imaging

High Content Imaging

  • High Content Analysis/Screening
  • 2D, co-culture, 3D imaging
  • Drug response HCS
  • Cell Painting assay
Custom Assay Development

Custom Assay Development

  • Compound validation assays
  • Complex dosing schemes
  • Full gamut of phenotypic and molecular readouts